Data Carpentry Genomics workshop August 17-18, 2018

South Big Data Hub/DataUP/Georgia Tech are sponsoring a Data Carpentry Genomics workshop with IDI-BD2K in Rio Piedras August 17-18, 2018.

Genomics Project Organization

  • Data tidiness
  • Planning NGS Projects
  • Examining Data on NCBI SRA database

The Unix Shell

  • Files and directories
  • Pipes and redirection
  • Creating and running shell scripts
  • Organizing bioinformatics projects

Wrangling Genomics Data

  • Assessing Read Quality
  • Trimming and Filtering Reads
  • Variant Calling
  • Automation

Cloud computing

  • What is the cloud
  • Logging into the cloud
  • Setting up your environment
  • Moving data and results to and from the cloud

See the course page for details and registration: